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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
13
total RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
203
DNA binding
34
DNA accessibility
13
Transcription
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
221
bam
199
bigWig
196
bed narrowPeak
120
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
tsv
11
fastq
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
238
tissue
14
primary cell
Organ
935
pancreas
781
liver
665
connective tissue
511
epithelium
478
adipose tissue
368
heart
343
kidney
252
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
24
embryo
24
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
198
GRCh38
141
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
February, 2018
July, 2019
October, 2017
organ_slims!
skeleton
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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