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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
44
ATAC-seq
31
DNase-seq
4
pCHi-C
3
Hi-C
2
WGBS
Assay category
155
Transcription
154
DNA binding
75
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
103
histone
103
histone modification
61
broad histone mark
42
narrow histone mark
28
control
23
transcription factor
11
RNA binding protein
3
other context
3
other post-translational modification
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
July, 2019
21
May, 2019
9
November, 2018
8
March, 2020
8
October, 2019
7
December, 2018
7
January, 2019
3
February, 2020
3
May, 2021
1
October, 2017
Available data
219
bigWig
214
bam
201
bed narrowPeak
158
tsv
107
bigBed narrowPeak
31
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
24
fastq
6
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
393
Homo sapiens
Biosample type
318
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
393
AMP
Genome assembly (visualization)
261
GRCh38
185
hg19
Lab
353
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
February, 2018
July, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
393 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
WGBS
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
35
2
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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