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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
265
tissue
18
primary cell
Organ
922
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
22
vein
21
embryo
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
283
AMP
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
283
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2018
March, 2019
organ_slims!
bone element
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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