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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
2
pCHi-C
1
ATAC-seq
Assay category
59
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
2
March, 2020
1
January, 2018
Available data
59
bam
59
fastq
54
bigWig
53
bed narrowPeak
53
bigBed narrowPeak
2
tsv
Organism
70
Homo sapiens
Biosample type
60
cell line
8
primary cell
2
tissue
Organ
858
pancreas
726
liver
648
connective tissue
478
adipose tissue
449
epithelium
347
heart
314
kidney
173
vasculature
168
blood vessel
159
bone element
157
brain
113
artery
83
musculature of body
68
blood
68
bodily fluid
51
limb
39
eye
23
spleen
20
lung
19
embryo
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
62
AMP
8
T1D
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
February, 2018
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
tissue
sigmoid colon
1
small intestine
1
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