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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ATAC-seq
7
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
12
DNA accessibility
7
DNA binding
Target of assay
histone
6
histone modification
5
narrow histone mark
4
control
3
transcription factor
broad histone mark
Date released
8
August, 2021
8
February, 2021
8
February, 2023
7
December, 2017
February, 2018
2
May, 2021
1
January, 2018
Available data
25
bam
14
bigWig
11
bed narrowPeak
10
tsv
8
fastq
4
bed bed3
4
txt
1
bed bed3+
Organism
34
Homo sapiens
Biosample type
16
tissue
10
in vitro differentiated cells
8
cell line
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
embryo
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
1
hg18
Lab
34
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
February, 2018
target.investigated_as!
broad histone mark
histone
BIOSAMPLE
ASSAY
34 results
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total RNA-seq
ATAC-seq
ChIP-seq
GRO-seq
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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