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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
32
DNase-seq
3
ATAC-seq
2
pCHi-C
1
total RNA-seq
Assay category
101
DNA binding
35
DNA accessibility
1
Transcription
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
July, 2019
18
May, 2019
14
October, 2017
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
125
bam
100
bigWig
96
bed narrowPeak
93
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
17
fastq
3
tsv
1
bed bed3
Organism
139
Homo sapiens
Biosample type
128
tissue
11
primary cell
Organ
856
pancreas
720
liver
625
connective tissue
465
adipose tissue
456
epithelium
328
kidney
325
heart
195
vasculature
191
blood vessel
159
bone element
139
brain
130
artery
99
limb
71
musculature of body
68
blood
68
bodily fluid
56
eye
34
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
98
GRCh38
55
hg19
Lab
139
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
February, 2020
July, 2019
November, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
total RNA-seq
tissue
brain
16
14
1
1
layer of hippocampus
15
caudate nucleus
10
1
substantia nigra
10
temporal lobe
10
+ See 21 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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