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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
7
ChIP-seq
4
Hi-C
4
total RNA-seq
1
RRBS
1
WGBS
Assay category
33
DNA accessibility
7
DNA binding
4
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
February, 2020
Available data
39
bed narrowPeak
14
bam
7
bigWig
6
bigBed narrowPeak
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
49
tissue
1
primary cell
Organ
923
pancreas
781
liver
660
connective tissue
487
adipose tissue
469
epithelium
347
heart
243
kidney
179
vasculature
175
blood vessel
159
bone element
158
brain
111
artery
69
blood
69
bodily fluid
51
musculature of body
37
embryo
32
eye
25
spleen
20
lung
18
limb
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
50
AMP
Genome assembly (visualization)
40
hg19
12
GRCh38
Lab
50
AMP-T2D consortium
month_released!
February, 2020
June, 2019
October, 2019
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
tissue
retina
15
2
pigmented layer of retina
12
2
muscle of leg
7
1
gastrocnemius medialis
4
distal epiphysis of femur
1
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primary cell
retinal pigment epithelial cell
1
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