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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
93
single cell RNA-seq
15
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
118
DNA binding
109
Transcription
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
93
histone
93
histone modification
57
broad histone mark
36
narrow histone mark
14
control
11
transcription factor
9
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
February, 2020
1
February, 2023
Available data
129
bigWig
111
tsv
107
bed narrowPeak
102
bam
58
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
246
Homo sapiens
Biosample type
242
tissue
3
primary cell
1
in vitro differentiated cells
Organ
941
pancreas
788
liver
664
connective tissue
504
epithelium
488
adipose tissue
355
heart
273
kidney
brain
vasculature
222
blood vessel
159
bone element
137
artery
87
limb
69
blood
69
bodily fluid
53
eye
51
musculature of body
42
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
128
GRCh38
88
hg19
Lab
206
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
June, 2019
organ_slims!
brain
vasculature
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
2
1
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
1
+ See 8 more…
primary cell
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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