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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
5
ChIP-seq
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
7
Transcription
6
3D chromatin structure
6
DNA methylation
5
DNA binding
Target of assay
27
histone
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
35
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
May, 2019
Available data
42
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
60
Homo sapiens
Biosample type
54
tissue
6
primary cell
Organ
793
pancreas
687
liver
604
connective tissue
457
adipose tissue
429
epithelium
322
kidney
285
heart
159
bone element
148
vasculature
143
blood vessel
116
artery
84
brain
69
limb
68
blood
68
bodily fluid
60
musculature of body
57
eye
25
embryo
20
lung
19
spleen
18
nerve
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
February, 2020
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
60 results
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DNase-seq
Hi-C
ChIP-seq
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
3
4
1
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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