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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
44
DNA accessibility
17
DNA binding
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
6
February, 2021
5
July, 2019
February, 2020
1
May, 2019
Available data
66
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
70
Homo sapiens
Biosample type
70
tissue
Organ
744
pancreas
687
liver
598
connective tissue
457
adipose tissue
385
epithelium
324
kidney
293
heart
162
vasculature
159
bone element
157
blood vessel
119
artery
87
brain
70
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
25
embryo
20
lung
19
spleen
18
nerve
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
70
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
November, 2020
September, 2018
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
2
11
1
4
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
gastrocnemius medialis
4
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