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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
72
total RNA-seq
39
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
8
DNase-seq
5
pCHi-C
1
RRBS
Assay category
92
DNA accessibility
83
Transcription
39
DNA binding
1
DNA methylation
Target of assay
23
histone
23
histone modification
14
broad histone mark
10
control
9
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
66
February, 2023
48
October, 2019
19
April, 2020
9
June, 2019
5
May, 2019
4
July, 2019
February, 2020
2
August, 2021
1
March, 2020
Available data
109
bam
107
bed narrowPeak
91
bigWig
61
tsv
31
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
219
Homo sapiens
Biosample type
147
tissue
66
cell line
7
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
201
AMP
19
LungMap
Genome assembly (visualization)
134
GRCh38
127
hg19
Lab
201
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
February, 2020
BIOSAMPLE
ASSAY
220 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
coronary artery
36
5
2
tibial artery
1
23
2
islet of Langerhans
2
14
2
4
lung
9
10
1
retina
15
2
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
52
6
primary cell
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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