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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
51
DNA binding
44
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
February, 2020
Available data
100
bam
78
bed narrowPeak
77
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
104
tissue
Organ
872
pancreas
730
liver
649
connective tissue
477
adipose tissue
475
epithelium
350
heart
339
kidney
207
vasculature
202
blood vessel
159
bone element
157
brain
133
artery
104
limb
81
musculature of body
68
blood
68
bodily fluid
57
eye
34
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
83
GRCh38
82
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
27
2
1
4
tibial artery
19
2
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
4
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