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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
6
Hi-C
4
total RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
47
DNA accessibility
6
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
1
March, 2020
Available data
134
bam
106
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
4
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
141
Homo sapiens
Biosample type
119
tissue
22
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
113
hg19
108
GRCh38
Lab
141
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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primary cell
endothelial cell of umbilical vein
17
2
2
1
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