Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
188
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
412
DNA binding
192
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
215
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
34
August, 2021
18
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
February, 2020
Available data
542
bam
485
bigWig
326
fastq
304
bed narrowPeak
222
bigBed narrowPeak
173
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
650
Homo sapiens
Biosample type
358
tissue
265
cell line
14
primary cell
13
in vitro differentiated cells
Organ
936
pancreas
672
connective tissue
650
liver
516
epithelium
484
adipose tissue
379
heart
344
kidney
brain
228
vasculature
223
blood vessel
159
bone element
138
artery
119
limb
94
musculature of body
59
blood
59
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
650
AMP
Genome assembly (visualization)
492
hg19
399
GRCh38
Lab
580
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
month_released!
February, 2020
organ_slims!
brain
target.investigated_as!
RNA binding protein
recombinant protein
BIOSAMPLE
ASSAY
650 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
144
167
20
2
3
1
1
1
1
1
right lobe of liver
9
2
1
2
1
2
cell line
HepG2
242
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
Download