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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
188
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
487
DNA binding
192
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
292
November, 2017
194
May, 2020
50
December, 2017
48
November, 2018
40
May, 2022
35
August, 2017
33
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
February, 2020
Available data
629
bam
569
bigWig
417
fastq
389
bed narrowPeak
314
bigBed narrowPeak
173
tsv
68
tagAlign
51
bed broadPeak
51
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
725
Homo sapiens
Biosample type
372
cell line
333
tissue
13
primary cell
7
in vitro differentiated cells
Organ
867
pancreas
725
liver
636
connective tissue
479
epithelium
469
adipose tissue
339
kidney
333
heart
204
brain
188
vasculature
182
blood vessel
159
bone element
125
artery
85
limb
74
musculature of body
60
eye
59
blood
59
bodily fluid
33
embryo
26
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
725
AMP
Genome assembly (visualization)
572
hg19
482
GRCh38
Lab
655
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
10
inconsistent control read length
month_released!
February, 2020
target.investigated_as!
broad histone mark
chromatin remodeller
BIOSAMPLE
ASSAY
725 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
349
14
1
1
2
2
2
1
tissue
liver
121
167
20
2
3
1
1
1
1
1
right lobe of liver
7
2
1
2
1
2
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
7
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