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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
4
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
35
DNA binding
14
DNA accessibility
13
Transcription
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
43
October, 2019
19
April, 2020
February, 2020
1
March, 2020
Available data
42
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
62
Homo sapiens
Biosample type
63
tissue
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
44
AMP
19
LungMap
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
44
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
February, 2020
organ_slims!
skeleton
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
4
1
2
lung
10
9
1
islet of Langerhans
1
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