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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
7
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
61
Homo sapiens
Biosample type
55
tissue
6
primary cell
Organ
794
pancreas
liver
604
connective tissue
457
adipose tissue
431
epithelium
324
kidney
293
heart
162
vasculature
159
bone element
157
blood vessel
119
artery
87
brain
70
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
25
embryo
20
lung
19
spleen
18
nerve
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
February, 2020
organ_slims!
liver
target.investigated_as!
histone
histone modification
BIOSAMPLE
ASSAY
61 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
4
1
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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