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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
18
total RNA-seq
8
ATAC-seq
6
WGBS
5
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
132
DNA binding
21
Transcription
13
DNA accessibility
6
DNA methylation
Target of assay
75
histone
75
histone modification
50
broad histone mark
40
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
February, 2021
70
October, 2019
57
August, 2017
23
October, 2018
12
July, 2019
4
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
Available data
123
bam
90
bigWig
60
bed narrowPeak
55
bigBed narrowPeak
43
fastq
21
tsv
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
174
Homo sapiens
Biosample type
172
tissue
2
primary cell
1
in vitro differentiated cells
Organ
907
pancreas
735
liver
492
epithelium
346
kidney
327
heart
284
brain
228
connective tissue
170
vasculature
164
blood vessel
116
limb
104
adipose tissue
musculature of body
75
artery
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
spleen
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
175
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
November, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
tibial nerve
35
5
1
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
omental fat pad
11
5
1
1
1
+ See 4 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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