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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
34
DNase-seq
15
total RNA-seq
7
WGBS
5
ATAC-seq
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
80
DNA binding
39
DNA accessibility
18
Transcription
7
DNA methylation
4
3D chromatin structure
Target of assay
38
histone
38
histone modification
25
control
24
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
February, 2021
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
96
bam
77
bigWig
51
bed narrowPeak
47
bigBed narrowPeak
44
fastq
38
bed bed3+
35
bed broadPeak
34
bigBed broadPeak
18
tsv
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
150
Homo sapiens
Biosample type
148
tissue
2
primary cell
1
in vitro differentiated cells
Organ
896
pancreas
781
liver
457
epithelium
319
heart
316
kidney
225
connective tissue
200
brain
123
vasculature
117
blood vessel
104
adipose tissue
96
musculature of body
69
blood
bodily fluid
49
artery
47
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
151
AMP
Genome assembly (visualization)
77
hg19
76
GRCh38
Lab
151
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
October, 2019
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
muscle of leg
7
13
1
omental fat pad
11
2
5
1
1
subcutaneous adipose tissue
12
5
1
1
1
muscle of arm
17
+ See 8 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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