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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
12
total RNA-seq
6
WGBS
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
73
DNA binding
15
Transcription
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
56
bam
44
fastq
38
bigWig
16
tsv
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
104
Homo sapiens
Biosample type
102
tissue
2
primary cell
1
in vitro differentiated cells
Organ
896
pancreas
781
liver
457
epithelium
heart
316
kidney
225
connective tissue
200
brain
123
vasculature
117
blood vessel
104
adipose tissue
96
musculature of body
69
blood
69
bodily fluid
49
artery
47
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
105
AMP
Genome assembly (visualization)
39
hg19
38
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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