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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ATAC-seq
8
ChIP-seq
8
total RNA-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
45
DNA accessibility
10
Transcription
8
DNA binding
Target of assay
20
histone
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
43
February, 2023
8
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
42
bed narrowPeak
16
bam
9
bigWig
6
tsv
5
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
63
Homo sapiens
Biosample type
61
tissue
2
primary cell
Organ
763
pancreas
685
liver
399
epithelium
316
kidney
230
heart
151
connective tissue
99
brain
99
vasculature
94
blood vessel
73
adipose tissue
68
blood
68
bodily fluid
67
limb
63
musculature of body
58
eye
55
artery
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
9
bone element
8
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
44
GRCh38
13
hg19
Lab
63
AMP-T2D consortium
month_released!
February, 2021
organ_slims!
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
3
1
2
tibial artery
1
5
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 2 more…
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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