Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
184
total RNA-seq
21
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
whole genome sequencing assay
Assay category
533
DNA binding
187
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
1
May, 2021
Available data
654
bam
598
bigWig
450
fastq
421
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
vcf
Organism
761
Homo sapiens
Biosample type
399
cell line
360
tissue
2
primary cell
Organ
914
pancreas
788
liver
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
760
AMP
1
T1D
Genome assembly (visualization)
597
hg19
506
GRCh38
Lab
689
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2021
organ_slims!
epithelium
skin of body
BIOSAMPLE
ASSAY
761 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
1
2
1
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
megakaryocyte
1
Download