Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 76target gene predictions
  • 72chromatin state
  • 60candidate regulatory elements
  • 42accessible chromatin
  • 36Fine-mapped variants
  • 29eQTL
  • 18gene expression
  • 18variant allelic effects
  • 6binding sites
Date released
  • 180September, 2022
  • February, 2021
  • 38March, 2020
  • 29January, 2020
  • 21June, 2020
  • 19May, 2020
  • 18February, 2020
  • 18January, 2022
  • 11May, 2021
  • 6August, 2017
  • 6October, 2022
  • 4May, 2019
  • 3September, 2023
  • 1February, 2024
  • 1February, 2025
  • 1March, 2024
  • 1November, 2019
Available data
  • 217bed bed3+
  • 66bed bed9
  • 66tsv
  • 21bigWig
  • 6bigBed bed9
Organism
  • 356Homo sapiens
Collection Tags
  • 180EpiMap
  • 60GTEx
  • 33DGA
  • 21ChIP-Atlas
  • 17T1D
  • 17T2D
  • 17eQTLCatalogue
  • 11ENCODE
  • 5AMP
Biosample type
  • 265tissue
  • 57cell line
  • 30primary cell
  • 4in vitro differentiated cells
  • 1stem cell
Organ
  • 2864vasculature
  • 2812blood vessel
  • 2785bodily fluid
  • 2778blood
  • 2651vein
  • 762epithelium
  • 464kidney
  • 371connective tissue
  • 357brain
  • 288musculature of body
  • 246pancreas
  • 241lung
  • 218intestine
  • 209heart
  • 186limb
  • 162embryo
  • 137liver
  • 136skin of body
  • 128large intestine
  • 113extraembryonic component
  • 92eye
  • 90stomach
  • 76adipose tissue
  • 73uterus
  • 66small intestine
  • 64artery
  • 59adrenal gland
  • 59mammary gland
  • 55placenta
  • 53bone element
  • 49prostate gland
  • 46ureter
  • 38gonad
  • 38thymus
  • 36penis
  • 35esophagus
  • 35lymph node
  • 34spinal cord
  • 24spleen
  • 22nerve
  • 19lymphatic vessel
  • 19lymphoid tissue
  • 19ovary
  • 19thyroid gland
  • 18testis
  • 15mouth
  • 12pituitary gland
  • 11bronchus
  • 10breast
  • 9skeleton
  • 9urinary bladder
  • 8bone marrow
  • 8tongue
  • 8vagina
  • 4nose
  • 1pericardium
  • 1trachea
Project
  • 357AMP
Genome assembly (visualization)
  • 314hg19
  • 152GRCh38
month_released!
  • February, 2021
BIOSAMPLE
TYPE

357 results

search-icontable-tab-icon
Clear Filters
target gene predictions
chromatin state
candidate regulatory elements
accessible chromatin
Fine-mapped variants
eQTL
gene expression
variant allelic effects
binding sites
tissue
brain1618162211
caudate nucleus34323211
frontal cortex22223221
cerebellum2221322
substantia nigra232331
cell line
pituitary stalk10
SK-N-SH3221
SK-N-DZ2221
BE(2)-C11111
SK-N-MC11111
primary cell
choroid plexus epithelial cell111111
cardiac fibroblast32
astrocyte of the cerebellum11111
astrocyte of the hippocampus11111
brain microvascular endothelial cell1111
in vitro differentiated cells
hippocampal neuron11
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
stem cell
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego