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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
3
MeRIP-seq
Assay category
27
DNA binding
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
30
control
9
transcription factor
8
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
12
August, 2017
3
December, 2017
3
November, 2020
3
October, 2019
2
June, 2019
2
November, 2017
2
November, 2019
1
August, 2021
1
May, 2019
1
May, 2021
Available data
27
bam
17
fastq
2
bigWig
2
tagAlign
Organism
30
Homo sapiens
Biosample type
21
primary cell
5
cell line
4
in vitro differentiated cells
Organ
108
liver
53
pancreas
35
connective tissue
31
brain
30
epithelium
24
adipose tissue
20
vasculature
19
blood vessel
18
heart
17
limb
12
kidney
11
nerve
8
spleen
7
artery
7
embryo
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
Project
30
AMP
Genome assembly (visualization)
2
hg19
Lab
27
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
month_released!
February, 2021
organ_slims!
adrenal gland
mammary gland
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
MeRIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
brain microvascular endothelial cell
1
+ See 4 more…
cell line
EndoC_BH1
2
3
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
See all biosamples
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