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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 189total RNA-seq
  • 22ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 2pCHi-C
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 192Transcription
  • 28DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 680bam
  • 622bigWig
  • 465fastq
  • 440bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 12bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1hdf5
  • 1vcf
Organism
  • 788Homo sapiens
Biosample type
  • 399cell line
  • 360tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 914pancreas
  • 788liver
  • 492epithelium
  • 346kidney
  • 327heart
  • 286brain
  • 229connective tissue
  • 170vasculature
  • 164blood vessel
  • 116limb
  • 105adipose tissue
  • 96musculature of body
  • 75artery
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 9bone element
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 788AMP
Genome assembly (visualization)
  • 623hg19
  • 530GRCh38
Lab
  • 717AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

788 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG23781412211
tissue
liver14516720231111
right lobe of liver1031212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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