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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 915total RNA-seq
  • 348single cell RNA-seq
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 3RNA microarray
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1285Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • February, 2021
  • 186August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 96August, 2017
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10April, 2020
  • 10December, 2019
  • 4March, 2023
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 926tsv
  • 798bam
  • 793bigWig
  • 361fastq
  • 68txt
  • 52zippedFastqFolder
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
  • 2csv
Organism
  • 1298Homo sapiens
Biosample type
  • 788tissue
  • 362primary cell
  • 116in vitro differentiated cells
  • 45cell line
  • 2stem cell
Organ
  • 471pancreas
  • 189liver
  • 178epithelium
  • 120kidney
  • 110heart
  • 28connective tissue
  • 21brain
  • 19eye
  • 15adipose tissue
  • 14embryo
  • 13blood vessel
  • 13vasculature
  • 10lung
  • 8musculature of body
  • 4artery
  • 4bone element
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1027AMP
  • 165HPAP
  • 60T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 794hg19
  • 792GRCh38
Lab
  • 912AMP-T2D consortium
  • 165Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 98inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
month_released!
  • February, 2021
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1313 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
MeRIP-seq
ChIP-seq
STARR-seq
RNA microarray
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
islet of Langerhans29264
liver1671
kidney4959
heart left ventricle318
heart right ventricle117
primary cell
Langerhans cell73
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
EndoC_BH1761
HepG292
H1-hESC8
EndoC-BH111
HEK293T2
stem cell
SB Ad3.111
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