Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 915total RNA-seq
  • 348single cell RNA-seq
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 2RNA microarray
Assay category
  • 1281Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • February, 2021
  • 185August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 94February, 2023
  • 89August, 2017
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 926tsv
  • 791bam
  • 787bigWig
  • 354fastq
  • 67txt
  • 52zippedFastqFolder
  • 2bed bed3+
  • 2csv
Organism
  • 1298Homo sapiens
Biosample type
  • 779tissue
  • 362primary cell
  • 116in vitro differentiated cells
  • 41cell line
Organ
  • 463pancreas
  • 189liver
  • 177epithelium
  • 120kidney
  • 110heart
  • 27connective tissue
  • 21brain
  • 19eye
  • 14adipose tissue
  • 14embryo
  • 13blood vessel
  • 13vasculature
  • 9lung
  • 8musculature of body
  • 4artery
  • 4bone element
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1017AMP
  • 165HPAP
  • 60T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 788hg19
  • 786GRCh38
Lab
  • 902AMP-T2D consortium
  • 165Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
Audit category:
  • 98inconsistent ontology term
  • 4audit script error
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

1298 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
MeRIP-seq
STARR-seq
RNA microarray
tissue
islet of Langerhans29264
liver1671
kidney4959
heart left ventricle318
heart right ventricle117
primary cell
Langerhans cell73
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
EndoC_BH176
HepG292
H1-hESC8
HEK293T2
early embryonic cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego