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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 753ChIP-seq
  • 217total RNA-seq
  • 189ATAC-seq
  • 94single cell RNA-seq
  • 49DNase-seq
  • 47pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2WGBS
  • 1DNAme array
Assay category
  • 753DNA binding
  • 322Transcription
  • 254DNA accessibility
  • 22DNA methylation
  • 193D chromatin structure
Target of assay
  • 418transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1130bam
  • 1051bigWig
  • 724bed narrowPeak
  • 624fastq
  • 529bigBed narrowPeak
  • 339tsv
  • 140tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 105bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 5bed bed3
  • 5hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 1436Homo sapiens
Biosample type
  • 467primary cell
  • 459cell line
  • 345tissue
  • 161in vitro differentiated cells
  • 4stem cell
Organ
  • 423liver
  • 195pancreas
  • 163epithelium
  • 96brain
  • 58blood
  • 58bodily fluid
  • 56connective tissue
  • 56kidney
  • 47vasculature
  • 42blood vessel
  • 39heart
  • 22musculature of body
  • 19vein
  • 13embryo
  • 12adipose tissue
  • 9artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1271AMP
  • 161T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 1124hg19
  • 976GRCh38
Lab
  • 1224AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 116inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • February, 2021
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1436 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
WGBS
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG233551121
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221037612134
liver423111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
hepatocyte15
adipocyte71411
cardiomyocytes12
stem cell
hESC3
mesenchymal stem cell1
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