Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1105target gene predictions
  • 944chromatin state
  • 902accessible chromatin
  • 872candidate regulatory elements
  • 512gene expression
  • 186eQTL
  • 172differential activity
  • 140variant allelic effects
  • 137histone modifications
  • 99binding sites
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
Date released
  • 2639February, 2025
  • February, 2021
  • 2511September, 2022
  • 378February, 2024
  • 289June, 2020
  • 286September, 2023
  • 250May, 2021
  • 222November, 2021
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 3422bed bed3+
  • 3398tsv
  • 869bed bed9
  • 532bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 25txt
  • 13bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 7780Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 415T1D
  • 402AMP
  • 343DGA
  • 294T2DKP
  • 290ChIP-Atlas
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 149GTEx
  • 129 T2DKP
  • 128ENCODE
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4654tissue
  • 1904primary cell
  • 1000cell line
  • 264in vitro differentiated cells
  • 4stem cell
Organ
  • 2860vasculature
  • 2809blood vessel
  • 2781bodily fluid
  • 2774blood
  • 2650vein
  • 703epithelium
  • 464kidney
  • 346brain
  • 340connective tissue
  • 279musculature of body
  • 234lung
  • 232pancreas
  • 204intestine
  • 202heart
  • 183limb
  • 157embryo
  • 133liver
  • 126skin of body
  • 120large intestine
  • 110extraembryonic component
  • 92eye
  • 84stomach
  • 73adipose tissue
  • 70uterus
  • 63small intestine
  • 62artery
  • 54mammary gland
  • 54placenta
  • 53adrenal gland
  • 53bone element
  • 47prostate gland
  • 46ureter
  • 37thymus
  • 36gonad
  • 35penis
  • 34lymph node
  • 33esophagus
  • 33spinal cord
  • 23spleen
  • 22nerve
  • 19lymphoid tissue
  • 18lymphatic vessel
  • 18testis
  • 17ovary
  • 17thyroid gland
  • 15mouth
  • 10bronchus
  • 9breast
  • 9skeleton
  • 9urinary bladder
  • 8bone marrow
  • 8tongue
  • 8vagina
  • 4nose
  • 2pituitary gland
  • 1pericardium
  • 1trachea
Project
  • 7228AMP
  • 281KPMP
  • 222ENCODE
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 4340hg19
  • 1787GRCh38
  • 4hg18
month_released!
  • February, 2021
software_used.software.name!
  • abc
BIOSAMPLE
TYPE

7828 results

search-icontable-tab-icon
Clear Filters
pQTL
target gene predictions
chromatin state
accessible chromatin
candidate regulatory elements
gene expression
eQTL
differential activity
variant allelic effects
histone modifications
binding sites
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
tissue
whole blood26351
heart202151922
stomach191931911
brain1618216121
kidney1416101411
primary cell
monocyte21815484121
CD8-positive, alpha-beta T cell214330
common myeloid progenitor, CD34-positive131313
B cell986122
macrophage212329311
cell line
HeLa-S354331
A54918181181
H1-hESC3811181
K562227161
EndoC_BH118831
in vitro differentiated cells
neural progenitor cell54104714
hematopoietic multipotent progenitor cell10101101
adipocyte2642
embryonic stem cell156
extended pluripotent stem (EPS) cells9
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego