Annotation Matrix

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Date released
Available data
Organism
Collection Tags
Biosample type
Organ
Project
Genome assembly (visualization)
Encyclopedia version
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BIOSAMPLE
TYPE

8388 results

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tissue
whole blood2635
heart20
stomach21
brain16
kidney14
lung17
muscle of arm16
small intestine17
adrenal gland17
placenta15
muscle of leg14
large intestine14
left lung13
liver10
muscle of back13
thymus14
islet of Langerhans1
retina3
right lung11
right kidney10
renal pelvis9
renal cortex interstitium9
heart left ventricle7
left kidney9
adipose tissue8
spinal cord8
spleen8
tibial nerve3
body of pancreas5
coronary artery3
pigmented layer of retina
caudate nucleus3
right atrium auricular region2
sigmoid colon7
tibial artery2
ovary6
pancreas5
psoas muscle8
frontal cortex2
heart right ventricle5
omental fat pad2
thyroid gland5
transverse colon5
cerebellum2
gastrocnemius medialis5
subcutaneous adipose tissue
substantia nigra2
ascending aorta2
muscle of trunk5
putamen1
chorionic villus4
endocrine pancreas4
testis3
Ammon's horn2
aorta4
layer of hippocampus3
left cardiac atrium1
skeletal muscle tissue3
Peyer's patch3
chorion membrane3
temporal lobe2
upper lobe of left lung3
thoracic aorta2
angular gyrus2
breast epithelium3
esophagus3
esophagus muscularis mucosa2
left renal cortex interstitium2
left renal pelvis2
prostate gland2
right lobe of liver1
right renal cortex interstitium2
right renal pelvis2
trophoblast3
vagina2
cingulate gyrus2
colonic mucosa2
duodenal mucosa2
esophagus squamous epithelium2
eye2
limb2
mucosa of rectum2
occipital lobe1
right cardiac atrium2
stomach smooth muscle2
tongue2
urinary bladder2
uterus2
Brodmann (1909) area 462
amygdala
anterior cingulate cortex
cerebellum (Hemisphere)
globus pallidus1
hypothalamus
lower leg skin2
medulla oblongata1
midbrain1
muscle layer of colon2
muscle layer of duodenum2
nucleus accumbens
parathyroid adenoma2
pons1
skin of body1
superior temporal gyrus1
C1 segment of cervical spinal cord
cerebellar cortex1
gastrocnemius medialis(Muscle - Skeletal)
left ventricle myocardium
middle frontal gyrus1
cartilage tissue2
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
embryonic facial prominence1
germinal matrix1
inferior parietal cortex1
rectum smooth muscle tissue1
umbilical cord1
amnion1
arm bone1
femur1
gastroesophageal sphincter1
germinal center1
leg bone1
mucosa of stomach1
hindlimb muscle
muscle of leg
blood
blood vessel
cortex of kidney
dorsolateral prefrontal cortex1
minor salivary gland
pancreatic ductal cell
pancreatic stellate cell
tissue
left kidney
omental fat pad
Pancreatic islets
Schwann cell
abdominal aorta artery
aortic valve
beige adipocyte1
bladder
bladder (urinary bladder)1
breast
breast - mammary tissue
cardiac ventricle1
cerebellar hemisphere
cerebrospinal fluid1
cervix - ectocervix
cervix - endocervix
colon - sigmoid
colon - transverse
colon sigmoid
cortex
crypt of Lieberkuhn
diencephalon
endothelial cell
esophagus - gastroesophageal junction
esophagus - mucosa
esophagus - muscularis
esophagus mucosa
fallopian tube
fetal heart
forelimb muscle
gastric (mucosa of stomach)1
glomerular epithelium
kidney - cortex
kidney - medulla
metanephros
mid-frontal lobe
mitral valve
nephron tubule
pancreatic A cell
pancreatic D cell
pancreatic PP cell
pancreatic acinar cell
parietal lobe
pituitary
pituitary gland
prefrontal cortex
prostate
pulmonary valve
renal cortex tubule
renal glomerulus
skeletal muscle
skin - not sun exposed (suprapubic)
skin - sun exposed (lower leg)
small intestine - terminal Ileum
subcutaneous abdominal adipose tissue
synovial joint
thyroid
tissue-resident macrophage
tricuspid valve
type B pancreatic cell
visceral abdominal adipose tissue
white adipose tissue1
primary cell
monocyte2
endothelial cell7
B cell10
macrophage3
CD8-positive, alpha-beta T cell5
T cell4
fibroblast4
smooth muscle cell6
common myeloid progenitor, CD34-positive14
natural killer cell5
hepatocyte3
CD14-positive monocyte19
CD4-positive, alpha-beta memory T cell9
pericyte cell10
regulatory T cell4
adipocyte
cardiac muscle cell1
pancreatic ductal cell3
CD8-positive, alpha-beta memory T cell7
T-helper 1 cell3
neuron
T-helper 17 cell3
endothelial cell of lymphatic vessel1
pericyte
mononuclear cell6
astrocyte4
mast cell1
pancreatic beta cell2
dendritic cell
endothelial cell of hepatic sinusoid
pancreatic acinar cell3
pancreatic delta cell4
T-helper 2 cell3
endocardial cell1
endothelial cell of umbilical vein4
pancreatic alpha cell2
skeletal muscle satellite cell2
trophoblast cell5
fibroblast of lung4
keratinocyte5
neutrophil3
excitatory neuron
fibroblast of cardiac tissue4
foreskin keratinocyte4
hepatic stellate cell1
mammary gland epithelial cell4
skeletal muscle myoblast2
erythroblast2
fibroblast of dermis4
epithelial cell of proximal tubule1
naive thymus-derived CD4-positive, alpha-beta T cell2
osteoblast2
kidney tubule cell2
memory B cell2
naive T cell3
naive thymus-derived CD8-positive, alpha-beta T cell2
neurosphere3
pancreatic A cell3
skeletal muscle fiber
skin fibroblast3
type B pancreatic cell3
glomerular endothelial cell1
glutamatergic neuron2
pancreatic stellate cell1
CD4-positive, alpha-beta T cell3
bronchial epithelial cell2
epithelial cell of prostate3
foreskin fibroblast2
kidney glomerular epithelial cell1
leukocyte
luminal epithelial cell of mammary gland3
mature neutrophil
mesothelial cell1
renal cortical epithelial cell1
retinal pigment epithelial cell1
type I muscle cell1
type II muscle cell1
type II pneumocyte2
acinar cell
alternatively activated macrophage1
choroid plexus epithelial cell1
colon epithelial cell3
cortical cell of adrenal gland2
dermis blood vessel endothelial cell2
dermis lymphatic vessel endothelial cell2
enterocyte
fibroblast of breast2
glomerular visceral epithelial cell1
kidney epithelial cell1
mesenchymal stem cell
myoepithelial cell of mammary gland2
naive B cell2
olfactory receptor cell6
pancreatic polypeptide-secreting cell1
cardiac fibroblast
Adaptive / Maladaptive / Repairing Fibroblast
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
Afferent / Efferent Arteriole Endothelial Cell
B Cell
CD14-positive, CD16-negative classical monocyte
CD4-positive helper T cell2
Classical Dendritic Cell
Connecting Tubule Cell
Connecting Tubule Intercalated Cell Type A
Connecting Tubule Principal Cell
Cortical Thick Ascending Limb Cell
Cycling Endothelial Cell
Cycling Epithelial Cell
Cycling T Cell
Cytotoxic T Cell
Degenerative Connecting Tubule Cell
Degenerative Connecting Tubule Cell / Principal Cell
Degenerative Cortical Thick Ascending Limb Cell
Degenerative Distal Convoluted Tubule Cell
Degenerative Intercalated Cell Type A
Degenerative Peritubular Capillary Endothelial Cell
Degenerative Principal Cell
Degenerative Proximal Tubule Epithelial Cell
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
Degenerative Vascular Smooth Muscle Cell
Descending Thin Limb Cell Type 1
Distal Convoluted Tubule Cell Type 1
Fibroblast
Glomerular Capillary Endothelial Cell
Intercalated Cell Type A
Intercalated Cell Type B
Lymphatic Endothelial Cell
M2 Macrophage
Medullary Thick Ascending Limb Cell
Mesangial Cell
Monocyte
Monocyte-derived Cell
Myofibroblast
Natural Killer T Cell
Natural Killer T Cell Type 1
Natural Killer T Cell Type 2
Non-Classical Monocyte
Parietal Epithelial Cell
Peritubular Capillary Endothelial Cell
Plasma Cell
Plasmacytoid Dendritic Cell
Podocyte
Principal Cell
Proximal Tubule Epithelial Cell Segment 1 and 2
Proximal Tubule Epithelial Cell Segment 3
Regulatory T Cell
Renin-positive Juxtaglomerular Granular Cell
T Cell
T follicular helper cell
Transitional Principal-Intercalated Cell
Vascular Smooth Muscle Cell / Pericyte
astrocyte of the cerebellum1
astrocyte of the hippocampus1
basal cell1
central memory CD8-positive, alpha-beta T cell
cholangiocyte
effector memory CD8-positive, alpha-beta T cell
epithelial cell of esophagus1
fibroblast of mammary gland1
fibroblast of pulmonary artery1
fibroblast of villous mesenchyme1
gabaergic neuron2
inflammatory macrophage1
inhibitory neuron
kidney capillary endothelial cell1
mesenchymal stem cell of adipose tissue
myofibroblast cell
oligodendrocyte1
oligodendrocyte precursor cell1
pancreatic D cell
pancreatic endothelial cell
skeletal muscle cell1
smooth muscle cell of the brain vasculature1
CD1c-positive myeloid dendritic cell1
activated CD4-positive, alpha-beta T cell2
articular chondrocyte
blood vessel smooth muscle cell2
brain microvascular endothelial cell1
effector CD4-positive, alpha-beta T cell
effector T cell
enteric smooth muscle cell2
fibroblast of peridontal ligament1
fibroblast of the aortic adventitia1
gamma-delta T cell
iris pigment epithelial cell1
mammary epithelial cell1
mature natural killer cell
megakaryocyte2
memory T cell
memory regulatory T cell
mesothelial cell of epicardium
myeloid cell
neural cell
non-pigmented ciliary epithelial cell1
pancreatic MUC5B+ductal cell
pancreatic alpha+beta cell
pancreatic cycling alpha cell
pancreatic gamma+epsilon cell
pancreatic macrophage cell
pancreatic mast cell
pulmonary artery endothelial cell1
renal principal cell
smooth muscle cell of the esophagus2
type I pneumocyte1
Cycling Mononuclear Phagocyte
Mast Cell
Schwann cell
activated CD8-positive, alpha-beta T cell1
amnion mesenchymal stem cell1
amniotic stem cell1
aortic endothelial cell
astrocyte of the spinal cord1
blood cell
ciliated cell1
club cell1
enteric neuron1
epidermal melanocyte1
epithelial cell of amnion1
fibro-adipogenic progenitor cell
fibroblast of gingiva1
fibroblast of the conjunctiva1
foreskin melanocyte1
glial cell
goblet cell
kidney connecting tubule epithelial cell
lung microvascular endothelial cell1
mammary stem cell1
mesangial cell
microglial cell1
naive B cel
naive regulatory T cell
naive t cell1
neuromuscular junction nucleus
pancreatic quiescent stellate cell
parietal cell1
peptic cell1
plasma cell1
plasmacytoid dendritic cell1
regular cardiac myocyte1
renal intercalated cell
schwann cell1
smooth muscle cell of the coronary artery1
stromal cell of bone marrow1
thyroid follicular cell1
type 1 muscle cell
type 2a muscle cell
type 2x muscle cell
Muller cell
T-cell2
acute myeloid leukemia cell
alveolar macrophage1
aortic adventitial fibroblast
basal cell of epidermis1
bone marrow cell
brain pericyte
capillary endothelial cell
cardiac endothelial cell1
colon goblet cell1
conventional dendritic cell1
eccrine cell1
enterochromaffin-like cell1
enterocyte of epithelium of small intestine1
epithelial cell of distal tubule
erythrocyte
extracellular matrix secreting cell
fat cell1
fetal cardiomyocyte
foveolar cell of stomach1
granular cell of epidermis1
intestinal tuft cell1
kidney distal convoluted tubule epithelial cell
kidney loop of Henle thick ascending limb epithelial cell
luteal cell1
mature NK T cell1
melanocyte1
myeloid dendritic cell
myoepithelial cell1
natural killer cell mediated cytotoxicity1
neuronal stem cell
non keratinizing barrier epithelial cell1
non-classical monocyte1
paneth cell1
regular atrial cardiac myocyte1
regular ventricular cardiac myocyte
renal epithelial cell
respiratory goblet cell1
skeletal muscle fibroblast1
small intestine goblet cell1
stellate neuron1
stomach neuroendocrine cell1
stromal cell1
stromal cell of endometrium
type I cell of adrenal cortex1
type II cell of adrenal cortex1
uterine smooth muscle cell1
vascular associated smooth muscle cell
ventricular cardiac muscle cell1
brain microvascular endothelial cell
retinal pigment epithelial cell
B cell, CD19-positive1
B-1 B cell
B-1a B cell
B-2 B cell
B-Lymphocytes
B-lymphocyte
CD34-PB
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
CD4-Positive T-Lymphocytes
CD4-positive, CD25-positive, alpha-beta regulatory T cell
CD56-positive, CD161-positive immature natural killer cell1
Glioblastoma
Heart fetal (cardiac muscle cell)
Ishikawa
Leydig cell
Liver fetal (hepatocyte)
Satellite Cells, Skeletal Muscle
Th1 cell
Th17 cell
Th2 cell
activated pancreatic stellate cell
adult endothelial progenitor cell1
bronchial goblet cell
cardiac atrium fibroblast
cardiac fibroblast
cardiac ventricle fibroblast
cell1
cells - cultured fibroblasts
central memory CD4-positive, alpha-beta T cell
chromaffin cell of adrenal gland
ciliated epithelial cell
cytotoxic T cell
dedifferentiated amniotic fluid mesenchymal stem cell
effector CD8-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell
embryonic stem cell
endothelial cell of artery
endothelial cell of coronary artery
enteroendocrine cell
ependymal cell
erythroid cell
extravillous trophoblast
fetal thymocyte
fibro/adipogenic progenitor cell
fibroblast of arm1
gastric goblet cell
granulosa cell
helper T cell
hepatoblast
immature natural killer cell
islet of Langerhans
kidney granular cell
kidney inner medulla collecting duct epithelial cell
kidney interstitial cell
kidney interstitial fibroblast
kidney loop of Henle ascending limb epithelial cell
kidney loop of Henle epithelial cell
kidney loop of Henle thin descending limb epithelial cell
kidney proximal convoluted tubule epithelial cell
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
kidney proximal straight tubule epithelial cell
luminal epithelial cell of prostatic duct
lung neuroendocrine cell
lymphocyte of B lineage
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
macrophage(CL:0000235) and neutrophil(CL:0000775)
mature eosinophil
megakaryocyte-erythroid progenitor cell1
mesenchymal cell
mesenchymal stem cell of adipose
metanephros
microglial cell/astrocyte
myotube
neoplastic cell
neuroendocrine cell
non-neuronal cell
pancreatic cell
pancreatic endocrine cell
pancreatic epsilon cell
pancreatic immune cell
parietal epithelial cell
pericardium fibroblast
peripheral blood stem cell
peripheral neuron
photoreceptor cell
placental hematopoietic stem cell
placental villus capillary endothelial cell
preadipocyte
primordial germ cell
progenitor cell
proximal tubule cells with injury markers
pulmonary interstitial fibroblast
quiescent pancreatic stellate cell
renal alpha-intercalated cell
renal beta-intercalated cell
retinal bipolar neuron
sensory neuron
somatic gonadal cell
sympathetic neuron
tracheal epithelial cell
trophoblast giant cell
ureteric bud
cell line
HeLa-S355
A54919
H1-hESC39
K56223
EndoC_BH11
HFFc619
MCF-76
GM128788
HepG23
H98
pituitary stalk10
endometrium adenocarcinoma3
immortal human breast epithelial cell line cell3
lymphocyte7
SK-N-SH3
induced pluripotent stem cell1
NAMALWA cell2
SK-N-DZ2
lymphoblastoid cell line
22Rv12
GM192402
IMR-902
KARPAS-422 cell2
LNCaP clone FGC2
T47D2
iPSC derived cell line4
AG04449 cell1
AG04450 cell1
AG09309 cell1
AG09319 cell1
AG10803 cell1
BE(2)-C1
BJ cell1
Caco-2 cell1
GM069901
GM128641
GM128651
GM185072
GM192382
GM192392
H7-hESC2
HAP-12
HCT1163
HEK2931
HL-601
HT-292
HUES84
LoVo cell2
MM.1S2
NT2-D1 cell1
OCI-LY72
PC-92
SK-N-MC1
WERI-Rb-11
A1721
A6732
ACHN1
AG08396 cell1
CMK1
Caki21
CyT494
Daoy1
GM033481
GM045031
GM045041
GM087141
GM102481
GM102661
GM128751
GM128911
GM128921
GM232481
H41
HUES61
HuH-71
KBM-71
L1-S81
L1-S8R1
LHCN-M21
M059J1
MG631
NB41
NCI-H226 cell1
PC-31
Panc12
RCC 78601
RPMI79511
RPMI82261
RWPE11
SJCRH301
SJSA11
SW4801
iPS DF 19.112
8988T1
ACC1121
AG08395 cell1
AG204431
C4-2B1
COLO8291
CWRU11
DND-411
DOHH21
EH1
EL1
ELF-11
ELR1
ES-I31
G4011
GM233381
H541
HCT-116 cell1
HEK293T1
HK-2 cell1
HPDE6-E6E71
HS-27A1
HS-51
HT10801
HTR-8/Svneo1
HUES481
HUES641
HuH-7.51
Jurkat2
KMS-111
KOPT-K11
Loucy1
NCI-H460 cell1
NCI-H9291
OCI-LY11
OCI-LY31
RWPE21
SK-MEL-51
SU-DHL-61
U9372
UCSF-41
VCaP cell1
WI381
colon carcinoma1
colon epithelial cell1
foreskin fibroblast1
iPS DF 19.71
iPS DF 4.7 Cell Line1
iPS DF 6.91
iPS-11a1
iPS-15b1
iPS-18a1
iPS-18c1
iPS-20b1
iPS-NIHi111
iPS-NIHi71
medulloblastoma1
renal cell carcinoma1
urothelium cell line1
BJAB cell2
DG-75 cell
ECC-1
ESC derived cell line
GM185051
GM190991
GM191931
HAC cell
HBMEC cell
LNCAP1
MCF 10A cell2
MCF10A-Er-Src cell
MDA-MB-231 cell1
MIN6
NCCIT cell1
NHEK
Normal Human Astrocytes
PANC-1 cell
Rh-4 cell
SAEC
SK-N-SH_RA
SUDHL5
T-47D cell
THP-12
U-266 cell
U-87 MG
U2OS
WI-38 cell
Z-138
esophageal epithelial cell
fibroblast cell line1
fibroblast of cardiac tissue
glomerular visceral epithelial cell
macrophage1
muscle
spinal cord
786-O cell
A-673 cell
B-lymphoblastoid cell line1
BL-2 cell
COLO-829 cell
COLO205
D341 Med cell
DND-41 cell
G-401 cell
GM10847
GM12801
GM12872
GM12873
GM12874
GM13976
GM13977
GM15510
GM184861
GM185081
GM185161
GM185221
GM18526
GM18951
GM191411
GM192041
GM20000
GP5d
HEK293-T-REx cell
HFF-Myc
HGF
HGPS cell
HeLa cell
Hodgkin lymphoma cell line
HuTu-80 cell
JVM-2 cell
Kasumi-1
L-1236 cell
L-428 cell
MOLM-13 cell
Myoblasts
NB-4 cell
NHBE cell
NHDF cell
OCI-AML3
PA-TU-8988T cell
PFSK-1 cell
RCC 7860 HIF1a re-expression
RCC 7860 HIF2a over-expression
RCC 7860 vector
REH cell
RKO
RS4-11 cell
Raji cell
Rh-5 cell
Rhabdomyosarcoma
SGBS preadipocytes
SH-SY5Y cell
SK-CO-1
SKH1-Hr hr
SKMC
SW1116
Saos-2 cell
T84
ZR-75-1 cell
acute myeloid leukemia
adipose-derived mesenchymal stem cell
brain pericyte
cardiac myocyte cell derived cell line
cells - EBV-transformed lymphocytes
choroid plexus epithelial cell
colon cancer cell line
dermal fibroblast
epithelial cell of prostate
fibroblast of the conjunctiva
glioblastoma cell
hESC H9
hippocampus
human amniotic epithelial cell
immortal kidney-derived cell line cell
leukemic stem cell
lung fibroblast cell line
monocyte1
renal proximal tubule epithelial cell
urothelial cell
vascular smooth muscle cell
in vitro differentiated cells
neural progenitor cell5
hematopoietic multipotent progenitor cell10
adipocyte6
embryonic stem cell1
extended pluripotent stem (EPS) cells
progenitor cell of endocrine pancreas
mesenchymal stem cell3
cardiomyocytes (cardiac muscle cell)3
dendritic cell6
endodermal cell2
muscle cell2
retinal pigment epithelial cell
SGBS preadipocytes
bipolar neuron2
chondrocyte
mesendoderm2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
cardiac muscle cell1
olfactory neurosphere cell line1
smooth muscle cell1
trophoblast cell2
cardiac mesoderm primordium1
cardiac precursors (cardiac muscle cell)1
ectodermal cell1
hepatocyte1
hepatocyte(AFP)
islet precursor cell1
mesodermal cell1
neural cell1
neuron1
pancreatic ductal cell
B cell
adipose-derived stem cell
differentiating adipose-derived stem cell
excitatory neuron
hippocampal neuron
lower motor neuron
lymphocyte of B lineage (iPSC)2
neuronal stem cell1
Adipose SGBS cell line (adipocyte)
CD4-positive helper T cell
CD8-positive, alpha-beta T cell
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
Human Mesenchymal Cell derived Adipocytes1
Human Mesenchymal Cell derived Osteoblasts1
Preadipose SGBS cell line (adipocyte)
Progenitor cell of Hypothalamus (neural progenitor cell)
T cell
cardiac fibroblast
cardiac muscle cell (pacemaker cell)
cardiac precursors
dermis microvascular lymphatic vessel endothelial cell
endothelial cell
erythroid cell
foreskin keratinocyte
foreskin melanocyte
iPS DF 4.7 Cell Line
intermediate cardiomyocytes
intermediate endothelial cell
intermediate smooth muscle cell
mammary gland epithelial cell
mesodermal cell (lineage marker-negative)
mesodermal cell (pacemaker intermediate)
myotube1
natural killer cell
neuron cell of Hypothalamus (neuron)
renal cell carcinoma
skeletal muscle myoblast1
skin fibroblast
stem cell
white adipose cell1
stem cell
H1-hESC
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1