Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
92
single cell RNA-seq
62
total RNA-seq
30
DNase-seq
8
ATAC-seq
3
Hi-C
3
pCHi-C
Assay category
154
Transcription
134
DNA binding
38
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
February, 2023
35
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
203
bigWig
190
bam
157
tsv
152
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
332
Homo sapiens
Biosample type
257
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
775
pancreas
741
liver
651
connective tissue
477
adipose tissue
379
epithelium
343
kidney
332
heart
251
brain
189
vasculature
184
blood vessel
151
bone element
117
limb
103
artery
84
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
24
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
332
AMP
Genome assembly (visualization)
210
GRCh38
171
hg19
Lab
292
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
July, 2019
May, 2022
October, 2017
BIOSAMPLE
ASSAY
332 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
heart
14
2
18
1
heart right ventricle
13
17
1
1
1
1
right cardiac atrium
6
18
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download