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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
60
ChIP-seq
58
total RNA-seq
9
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
60
DNA binding
58
Transcription
17
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
84
txt
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
Organism
220
Homo sapiens
Biosample type
150
tissue
61
cell line
9
primary cell
Organ
890
pancreas
791
liver
669
connective tissue
489
adipose tissue
472
epithelium
357
heart
340
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
211
AMP
9
T1D
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
211
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
month_released!
February, 2023
May, 2023
BIOSAMPLE
ASSAY
220 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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