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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
45
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
October, 2017
Available data
137
bam
106
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
23
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
146
Homo sapiens
Biosample type
146
tissue
Organ
885
pancreas
791
liver
669
connective tissue
489
adipose tissue
472
epithelium
357
heart
354
kidney
269
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
24
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
146
AMP
Genome assembly (visualization)
111
GRCh38
109
hg19
Lab
146
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
October, 2017
organ_slims!
blood
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
2
1
muscle of leg
7
13
1
muscle of arm
17
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