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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
42
ChIP-seq
38
DNase-seq
17
ATAC-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
64
Transcription
55
DNA accessibility
42
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
RNA binding protein
Date released
72
February, 2021
39
October, 2019
February, 2023
34
June, 2019
8
July, 2019
7
May, 2019
4
February, 2020
2
August, 2021
Available data
155
bam
120
bigWig
75
bed narrowPeak
64
tsv
54
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
166
Homo sapiens
Biosample type
98
tissue
66
cell line
2
primary cell
Organ
803
pancreas
691
liver
616
connective tissue
465
adipose tissue
420
epithelium
336
kidney
289
heart
212
brain
151
bone element
151
vasculature
146
blood vessel
91
artery
88
limb
76
musculature of body
59
blood
59
bodily fluid
33
embryo
29
eye
27
nerve
21
spleen
20
lung
18
ureter
13
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
133
GRCh38
133
hg19
Lab
166
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
WGBS
tissue
tibial nerve
5
19
2
1
muscle of arm
17
muscle of leg
3
13
1
tibial artery
1
9
2
1
coronary artery
1
4
2
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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