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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
434
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
274
November, 2017
167
May, 2020
52
December, 2017
41
August, 2017
40
May, 2022
34
November, 2018
30
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
574
bam
514
bigWig
389
fastq
334
bed narrowPeak
289
bigBed narrowPeak
175
tsv
53
bed broadPeak
53
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
674
Homo sapiens
Biosample type
338
cell line
316
tissue
12
primary cell
8
in vitro differentiated cells
Organ
808
pancreas
673
liver
627
connective tissue
473
adipose tissue
415
epithelium
336
kidney
306
heart
170
vasculature
166
blood vessel
165
brain
151
bone element
107
limb
99
artery
83
musculature of body
58
blood
58
bodily fluid
35
nerve
29
embryo
26
eye
23
spleen
20
lung
18
ureter
16
vein
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
674
AMP
Genome assembly (visualization)
518
hg19
439
GRCh38
Lab
606
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
15
inconsistent control read length
5
inconsistent control run_type
month_released!
February, 2023
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
674 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
315
14
1
1
2
2
2
1
tissue
liver
102
167
20
2
3
1
1
1
1
1
right lobe of liver
7
3
1
2
1
2
small intestine
1
primary cell
hepatocyte
2
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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