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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • 428ATAC-seq
  • 212DNase-seq
  • 81snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3single cell RNA-seq
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • 726DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 133August, 2021
  • 120May, 2019
  • February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 2050bam
  • 1829bigWig
  • 1746bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 267bed bed3+
  • 110tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2bed bed3
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
  • 1vcf
Organism
  • 2859Homo sapiens
Biosample type
  • 1371tissue
  • 702primary cell
  • 534cell line
  • 244in vitro differentiated cells
  • 8stem cell
Organ
  • 601liver
  • 436pancreas
  • 308epithelium
  • 264brain
  • 226kidney
  • 198connective tissue
  • 196heart
  • 136vasculature
  • 130blood vessel
  • 119limb
  • 89adipose tissue
  • 88musculature of body
  • 69blood
  • 69bodily fluid
  • 50artery
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 15eye
  • 10lung
  • 9bone element
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2536AMP
  • 166T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1830hg19
  • 1756GRCh38
  • 5hg18
Lab
  • 2274AMP-T2D consortium
  • 255Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 118inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

2859 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
single cell RNA-seq
DNAme array
whole genome sequencing assay
tissue
liver1452023111
islet of Langerhans7157154311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG2378115221
GM12878601
EndoC_BH1151912
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67711
embryonic stem cell4051
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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