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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 229total RNA-seq
  • 160ATAC-seq
  • 94single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 11small RNA-seq
  • 10MeRIP-seq
  • 10snATAC-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 755DNA binding
  • 334Transcription
  • 223DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1075bigWig
  • 725bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 359tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 104bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2bed bed3
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 1426Homo sapiens
Biosample type
  • 464primary cell
  • 460cell line
  • 324tissue
  • 174in vitro differentiated cells
  • 4stem cell
Organ
  • 426liver
  • 183pancreas
  • 169epithelium
  • 95brain
  • 61connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 40heart
  • 22musculature of body
  • 19vein
  • 16adipose tissue
  • 13embryo
  • 11artery
  • 8limb
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1276AMP
  • 140T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1146hg19
  • 1004GRCh38
Lab
  • 1232AMP-T2D consortium
  • 152Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 125inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • February, 2023
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1426 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
snATAC-seq
WGBS
FAIRE-seq
STARR-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG2335512112
GM1287856
Panc11111
EndoC_BH12226
H1-hESC8
tissue
islet of Langerhans22526612141
liver4231111
brain11121
heart53411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
cardiac precursors (cardiac muscle cell)1911
embryonic stem cell11541
adipocyte7711
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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