Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 178total RNA-seq
  • 88single cell RNA-seq
  • 73ATAC-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 3snATAC-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 277Transcription
  • 181DNA binding
  • 106DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 290tsv
  • 172bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 65bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 3cool
  • 2csv
  • 1bed bed3
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 610Homo sapiens
Biosample type
  • 290primary cell
  • 213tissue
  • 106in vitro differentiated cells
  • 1stem cell
Organ
  • 120pancreas
  • 81epithelium
  • 70brain
  • 50connective tissue
  • 24heart
  • 19kidney
  • 16adipose tissue
  • 16liver
  • 9musculature of body
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 486AMP
  • 120T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 485hg19
  • 427GRCh38
Lab
  • 454AMP-T2D consortium
  • 136Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 43inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

610 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snATAC-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte472621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans22567124
liver62111
brain62
heart2411
frontal cortex2211
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11541
cardiomyocytes12
adipocyte731
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego