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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
36
DNase-seq
8
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
130
DNA binding
52
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
51
transcription factor
34
broad histone mark
23
control
20
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
73
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
January, 2018
1
March, 2020
Available data
174
bam
146
bed narrowPeak
145
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
195
Homo sapiens
Biosample type
127
tissue
60
cell line
8
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
187
AMP
8
T1D
Genome assembly (visualization)
150
GRCh38
150
hg19
Lab
187
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
January, 2018
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
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