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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
119
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
RNA binding protein
Date released
92
August, 2021
66
February, 2021
54
April, 2019
36
February, 2023
35
May, 2024
27
June, 2019
22
July, 2019
19
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
205
bigWig
195
bam
175
bed narrowPeak
165
tsv
83
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
371
Homo sapiens
Biosample type
303
tissue
66
cell line
2
primary cell
Organ
937
pancreas
733
liver
connective tissue
516
epithelium
485
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
95
musculature of body
60
eye
58
blood
58
bodily fluid
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
371
AMP
Genome assembly (visualization)
247
GRCh38
174
hg19
Lab
336
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
month_released!
January, 2018
organ_slims!
connective tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
371 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
32
18
3
2
3
4
1
1
1
left cardiac atrium
35
18
1
coronary artery
4
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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