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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
63
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
47
histone
47
histone modification
30
broad histone mark
17
narrow histone mark
16
control
Date released
73
October, 2019
32
June, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
107
bam
86
bed narrowPeak
85
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
120
tissue
Organ
944
pancreas
786
liver
683
connective tissue
519
epithelium
490
adipose tissue
372
heart
335
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
January, 2019
May, 2019
May, 2023
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
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