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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
113
DNA binding
36
DNA accessibility
20
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
140
bigWig
137
bam
128
bed narrowPeak
127
bigBed narrowPeak
68
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
176
Homo sapiens
Biosample type
161
tissue
15
primary cell
Organ
881
pancreas
671
liver
645
connective tissue
466
adipose tissue
462
epithelium
365
heart
318
kidney
176
brain
174
vasculature
169
blood vessel
159
bone element
111
artery
90
musculature of body
52
limb
48
blood
48
bodily fluid
39
eye
30
embryo
20
lung
18
ureter
16
skeleton
11
spleen
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
176
AMP
Genome assembly (visualization)
136
GRCh38
80
hg19
Lab
176
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
January, 2019
October, 2019
organ_slims!
thymus
target.investigated_as!
control
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
14
1
1
layer of hippocampus
19
caudate nucleus
13
1
1
temporal lobe
13
1
1
substantia nigra
13
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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