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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
38
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
37
transcription factor
4
RNA binding protein
chromatin remodeller
3
control
Date released
25
December, 2018
19
April, 2020
13
November, 2018
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
Available data
38
bam
38
fastq
36
bigWig
35
bed narrowPeak
35
bigBed narrowPeak
1
tsv
Organism
66
Homo sapiens
Biosample type
39
cell line
20
tissue
8
primary cell
Organ
946
pancreas
761
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
47
blood
47
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
36
hg19
35
GRCh38
Lab
40
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
month_released!
January, 2019
target.investigated_as!
chromatin remodeller
other context
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
38
1
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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