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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
30
ATAC-seq
24
total RNA-seq
8
snATAC-seq
6
DNase-seq
5
pCHi-C
1
RRBS
Assay category
86
DNA binding
44
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
38
transcription factor
31
histone
31
histone modification
16
broad histone mark
15
control
15
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
Date released
67
October, 2019
31
February, 2023
27
December, 2018
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
2
February, 2020
1
January, 2018
1
July, 2019
1
March, 2020
Available data
99
bed narrowPeak
91
bam
77
bigWig
71
bigBed narrowPeak
42
fastq
11
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
160
Homo sapiens
Biosample type
104
tissue
43
cell line
13
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
8
T1D
Genome assembly (visualization)
105
hg19
76
GRCh38
Lab
152
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2019
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
5
2
islet of Langerhans
6
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
ovary
1
cell line
GM12878
42
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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