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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
DNase-seq
44
ChIP-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
6
RRBS
6
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
85
DNA accessibility
44
DNA binding
28
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
68
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
11
July, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
111
bed narrowPeak
92
bigWig
82
bam
71
bigBed narrowPeak
68
bed broadPeak
56
bed bed3+
55
bigBed broadPeak
15
tagAlign
15
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
176
Homo sapiens
Biosample type
157
tissue
19
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
125
hg19
77
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
month_released!
January, 2019
BIOSAMPLE
ASSAY
176 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
13
7
1
retina
3
15
3
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
1
3
1
skeletal muscle cell
1
2
1
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