Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
12
total RNA-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
GRO-seq
Assay category
40
DNA binding
12
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
23
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
May, 2021
1
January, 2018
1
March, 2020
Available data
55
bam
43
bigWig
28
bed narrowPeak
27
fastq
13
bigBed narrowPeak
12
tsv
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tagAlign
1
tar
Organism
59
Homo sapiens
Biosample type
27
in vitro differentiated cells
22
primary cell
8
cell line
2
tissue
Organ
877
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
390
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
1
hg18
Lab
59
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
January, 2021
May, 2021
BIOSAMPLE
ASSAY
59 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
tissue
islet of Langerhans
1
pituitary gland
1
Download