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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
2
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
80
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
January, 2021
1
January, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
84
bam
84
fastq
71
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
87
Homo sapiens
Biosample type
61
cell line
25
tissue
1
primary cell
Organ
938
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
1
T1D
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
86
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2021
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
1
primary cell
megakaryocyte
1
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