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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
56
total RNA-seq
43
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
48
DNA accessibility
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
14
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
October, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
125
bam
104
bigWig
93
bed narrowPeak
63
tsv
46
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
5
bed bed3+
3
fastq
2
bedpe bed3+
2
hic
Organism
172
Homo sapiens
Biosample type
100
tissue
66
cell line
6
primary cell
Organ
922
pancreas
662
connective tissue
580
liver
478
adipose tissue
476
epithelium
360
heart
313
kidney
182
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
172
AMP
Genome assembly (visualization)
146
GRCh38
113
hg19
Lab
172
AMP-T2D consortium
month_released!
July, 2019
May, 2020
October, 2019
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
5
1
35
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
pulmonary artery
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
brain microvascular endothelial cell
3
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
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