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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
43
ChIP-seq
6
WGBS
5
ATAC-seq
4
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
389
Transcription
43
DNA binding
10
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
July, 2019
7
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
Available data
433
bam
414
bigWig
389
tsv
43
fastq
13
bed narrowPeak
12
bigBed narrowPeak
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tagAlign
1
tar
Organism
452
Homo sapiens
Biosample type
445
tissue
7
primary cell
1
in vitro differentiated cells
Organ
744
pancreas
679
liver
587
connective tissue
446
adipose tissue
412
epithelium
313
kidney
271
heart
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
453
AMP
Genome assembly (visualization)
416
hg19
412
GRCh38
Lab
453
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
12
missing controlled_by
month_released!
July, 2019
November, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
453 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
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primary cell
endothelial cell of umbilical vein
2
2
2
1
in vitro differentiated cells
white fat cell
1
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