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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
56
total RNA-seq
45
ATAC-seq
10
DNase-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
119
DNA binding
62
Transcription
56
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
76
histone
76
histone modification
49
broad histone mark
29
control
27
narrow histone mark
14
transcription factor
4
RNA binding protein
3
other context
3
other post-translational modification
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
6
August, 2021
5
June, 2019
5
March, 2020
3
February, 2020
3
November, 2017
1
October, 2017
Available data
195
bam
156
bigWig
141
bed narrowPeak
92
bigBed narrowPeak
64
tsv
27
fastq
14
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
tar
Organism
244
Homo sapiens
Biosample type
151
tissue
66
cell line
27
primary cell
Organ
887
pancreas
781
liver
643
connective tissue
509
epithelium
456
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
244
AMP
Genome assembly (visualization)
195
GRCh38
164
hg19
Lab
244
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
October, 2018
BIOSAMPLE
ASSAY
244 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
aorta
13
1
4
1
1
ascending aorta
16
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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